bSECISearch
- a search and prediction program for bacterial SECIS elements
The
bSECISearch
program predicts candidate bacterial SECIS (selenocysteine insertion sequence) elements and their ORFs in a query genome or nucleotide sequence.
Advanced Options:
Consensus bacterial SECIS structure model:
Apical loop location: minimum start site
16
17
18
19
20
21
22
23
maximum end site
28
30
32
34
36
38
40
Apical loop length: minimum
3
4
5
6
7
maximum
8
9
10
11
12
13
14
Upper-stem length: minimum
3
4
5
6
7
8
maximum
8
9
10
11
12
13
14
15
16
Minimum free energy <
-7.5
-8.0
-9.0
-10.0
-11.0
kcal/mol
Choose this if bSECIS in 3'-UTR is also considered (Sec-UGA is very close to the stop codon)
SECIS element profiling and statistical evaluation:
Weight score threshold:
0
10
20
30
40
50
60
70
Query title (optional):
Query sequence (required):
Please enter your DNA sequence here:
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